I get the following warnings: I’m not sure what to do about them.
*********** Warning *************
Dataset centers are 55.139016 mm
apart.
7m*+ WARNING:e[0m No output dataset will be calculated
So, could you please provide more information, such as what function are you using, and what version of AFNI do you have (for example, what is the output of afni -ver)?
–pt
Oct 24 2016 (Version AFNI_16.3.05)
This is presumably the output from an afni_proc.py
analysis script, is that correct? The error suggests
that the input datasets do not have original scanner
coordinates in them. But it would be helpful to have
more details.
If possible, it would be nice to see the output from
“3dinfo” on the anat and (maybe just one) EPI dataset
used for the analysis. After that, we will probably
suggest running @Align_Centers…
- rick
Structural
3dinfo pb1976_silverman_stack3d_S010.nii
++ 3dinfo: AFNI version=AFNI_16.3.05 (Oct 24 2016) [64-bit]
Dataset File: pb1976_silverman_stack3d_S010.nii
Identifier Code: NII_jX5axnBl_Gf1Djoiq3rEzQ Creation Date: Mon May 8 12:09:38 2017
Template Space: ORIG
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST {assumed} [this CPU native = LSB_FIRST]
Storage Mode: NIFTI
Storage Space: 23,068,672 (23 million [mega]) bytes
Geometry String: “MATRIX(0,0,-1,88.7226,1,0,0,-164.4106,0,1,0,-136.0501):256,256,176”
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Anterior-to-Posterior
second (y) = Inferior-to-Superior
third (z) = Left-to-Right [-orient AIL]
R-to-L extent: -86.277 [R] -to- 88.723 [L] -step- 1.000 mm [176 voxels]
A-to-P extent: -164.411 [A] -to- 90.589 [P] -step- 1.000 mm [256 voxels]
I-to-S extent: -136.050 [I] -to- 118.950 [S] -step- 1.000 mm [256 voxels]
Number of values stored at each pixel = 1
– At sub-brick #0 ‘?’ datum type is short
functional
3dinfo pb1976_silverman_stack4d_S004.nii
++ 3dinfo: AFNI version=AFNI_16.3.05 (Oct 24 2016) [64-bit]
Dataset File: pb1976_silverman_stack4d_S004.nii
Identifier Code: NII_R3kd2uYMGqyDKuK6uQTnfg Creation Date: Mon May 8 12:11:05 2017
Template Space: ORIG
Dataset Type: Echo Planar (-epan)
Byte Order: LSB_FIRST {assumed} [this CPU native = LSB_FIRST]
Storage Mode: NIFTI
Storage Space: 1,442,707,200 (1.4 billion [giga]) bytes
Geometry String: “MATRIX(2,0,0,-108.9644,0,-1.955567,0.419237,76.9948,0,0.419237,1.955567,-87.76022):110,110,72”
Data Axes Tilt: Oblique (12.100 deg. from plumb)
Data Axes Approximate Orientation:
first (x) = Right-to-Left
second (y) = Posterior-to-Anterior
third (z) = Inferior-to-Superior [-orient RPI]
R-to-L extent: -108.964 [R] -to- 109.036 [L] -step- 2.000 mm [110 voxels]
A-to-P extent: -141.005 [A] -to- 76.995 [P] -step- 2.000 mm [110 voxels]
I-to-S extent: -87.760 [I] -to- 54.240 [S] -step- 2.000 mm [ 72 voxels]
Number of time steps = 414 Time step = 1.00000s Origin = 0.00000s
– At sub-brick #0 ‘?’ datum type is float
– At sub-brick #1 ‘?’ datum type is float
– At sub-brick #2 ‘?’ datum type is float
** For info on all 414 sub-bricks, use ‘3dinfo -verb’ **