No such file or directory: 'media/qc_09_regr_grayplot.pbar.json'

AFNI Message Board
1

Hi there,
I’m getting an error near the end of my proc_py processing - even after the output of ss_review_basic.
I think it has something to do with creating the subjects qc json file… eg. apqc_sub-103.json

Here is the error:


apqc_make_html.py -qc_dir QC_sub-103
Traceback (most recent call last):
  File "/usr/local/afni/apqc_make_html.py", line 189, in <module>
    AAII = lah.read_descrip_json(img_json)
  File "/tmp/mribin/afni_versions/linux_ubuntu_16_64_Sept2019/lib_apqc_html.py", line 1296, in read_descrip_json
    ainfo.set_all_from_dict(ddd) # set everything in this obj that we can
  File "/tmp/mribin/afni_versions/linux_ubuntu_16_64_Sept2019/lib_apqc_html.py", line 192, in set_all_from_dict
    self.add_subtext(DICT)
  File "/tmp/mribin/afni_versions/linux_ubuntu_16_64_Sept2019/lib_apqc_html.py", line 175, in add_subtext
    xx = parse_apqc_text_fields(DICT['subtext'])
  File "/tmp/mribin/afni_versions/linux_ubuntu_16_64_Sept2019/lib_apqc_html.py", line 67, in parse_apqc_text_fields
    sspbar = make_inline_pbar_str(ss)
  File "/tmp/mribin/afni_versions/linux_ubuntu_16_64_Sept2019/lib_apqc_html.py", line 96, in make_inline_pbar_str
    with open(fname_json, 'r') as fff:
IOError: [Errno 2] No such file or directory: 'media/qc_09_regr_grayplot.pbar.json'

Is there something I’ve done on my end that could be causing this issue? I haven’t had it in the past. I don’t think its preventing anything in the pipeline, other than the final text that’s usually in output files (pasted below), but a confirmation of this would be great.


apqc_make_html.py -qc_dir QC_sub-103
apqc_make_html.py -qc_dir QC_sub-103

++ Done! Wrote QC HTML.  To check, consider:

   afni_open -b QC_sub-103/index.html

echo \nconsider running: \n\n    afni_open -b /tmp/yassamri2/ORE/ScriptProcessingEnvironment/AFNI_ANTS_Analysis_Environment/sub-103/sub-103.ORE.preprocessed/QC_sub-103/index.html\n

consider running: 

    afni_open -b /tmp/yassamri2/ORE/ScriptProcessingEnvironment/AFNI_ANTS_Analysis_Environment/sub-103/sub-103.ORE.preprocessed/QC_sub-103/index.html

endif
cd ..
echo execution finished: `date`
date
execution finished: Tue Sep 24 10:29:08 PDT 2019
2

Hmm, that is an odd thing to have not working; it would suggest that one of the intermediate files didn’t get made, perhaps, so it can’t be parsed? (And all of the QC happens at the very end of the afni_proc.py processing).

What does


ls QC_*/*

show?

Also, if you ran afni_proc.py in one of the standard ways, there should be an “output.proc.*” text file created in the same directory that contains your results directory-- that contains a copy of all the text dumped into the terminal during processing, so it can be useful to see for any other potential errors earlier on. I will PM you instructions for uploading that, so I can take a look.

–pt