Hi,
Thank you for making the Allen mouse template available.
I have been warping some of my mice brain images to the CCF3, and the warp is working great (using either auto_warp or @animal_warper). However, the Allen template and the annotation have been taken to the Talairach space. Is there a way to take it out of talairach (to orig space)?
I have tried this function:
3drefit -view
to change the view to orig, but converting its output to NIFTI and then back to BRIK format shows +tlrc space again.
Momo