Dear AFNI:
I am new in AFNI. There are some issues I want to make sure when I use afni.proc.py to preprocess my fMRI data.
Error Message: Illegal value in tpattern file
I want to change slice timing using my own data during tshift process. I create a slice_timing.txt file which will be passed to 3dTshift. When it contains slice timing measured in milliseconds, it will report illegal value error. It works fine when I use slice timing measured in seconds.
I have noticed that the slice timing in the help documentation of 3dTshift is measured in milliseconds. So I am not sure which is right.
AFNI version info (afni -ver
): AFNI version=AFNI_25.0.13 (Apr 1 2025) [64-bit]
part of code:
-tshift_opts_ts -tpattern @${stpath} \