I ran this command in ++ Compile date = Oct 26 2017 {AFNI_17.3.01:linux_xorg7}
3dClustSim -mask mask_temp+tlrc -NN 1 -fwhmxyz ${xx} ${yy} ${zz} -pthr 0.005 0.001 -athr 0.05 0.01 0.005 -iter 10000 -quiet -prefix all_sb_${var_name}_std_FWHM_alsim
Of course, this command was old. And it echo errors in this new version of AFNI. The errors were:
++ Number of voxels in mask = 186996
++ start ACF calculations out to radius = 34.09 mm
- ACF done (0.00 CPU s thus far)
++ ACF 1D file [radius ACF mixed_model gaussian_NEWmodel] written to 3dFWHMx.1D
++ 1dplot: AFNI version=AFNI_17.3.01 (Oct 26 2017) [32-bit]
++ Authored by: RWC et al. - and 1dplot-ed to file 3dFWHMx.1D.png
++ 3dClustSim: AFNI version=AFNI_17.3.01 (Oct 26 2017) [32-bit]
++ Authored by: RW Cox and BD Ward
++ 186996 voxels in mask (32.81% of total)
*+ WARNING: -NN option is no longer supported! All NN cases are computed now
*+ WARNING: Use of -fwhmxyz is not advised; consider using -acf instead
FMRI data does not have Gaussian-shaped smoothness!
** FATAL ERROR: 3dClustSim – unknown option ‘8.09099’
** Program compile date = Oct 26 2017
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I wonder how to calculate the values for -acf option; and how to fix the error " – unknown option ‘8.09099’"
Thanks.