I am trying to make a resting state analysis pipeline. I tried to run afni_proc.py example 11.
Freesurfer is used for parcellation from an anatomical image. I am going to fit this parcellation on the epi functional images as well. In my knowledge, the functional image parcellation is different with the anatomical image parcellation, so that’s why my lab have been using the Craddock template to have whole brain ROIs for the functional images. Is AFNI usually using the freesurfer parcellation(Destrieux atlas) obtained from the anatomical image and fit on the functional images?, or do you have any proper template for the functional images?