Hi-
I'm on vacation at the moment, but will just comment briefly:
- As the afni_proc.py proc script processes, a dictionary of useful file (inputs, intermediate files and outputs) is built up.
- The programs that build the APQC HTML use that dictionary to know what to build. For example, knowing what dset/file defines the final space (either template, anat_final or volreg_epi reference vol).
- The fmriprep output covers the first few processing blocks of a typical afni_proc.py run. But items from that are not part of the reference dictionary above.
- This particular error this causes for the HTML build issue that is referenced in this post, is that the volume defining the final space isn't known for the reference dictionary.
- The tricky thing is that it appears there could be multiple spaces to choose from at the point fmriprep finishes. So, the user would have to specify one, and the question of how best to do that remains a bit.
--pt