Errors with QC blocks in APQC-html document

AFNI Message Board
1

Hi,

I would like to check the alignment of data by looking at the APQC-HTML file, but it only contains three QC blocks: ‘regr’, ‘warns’, ‘qsumm’. Blocks like ‘ve2a’ are missing. Since the same ‘-html_review_style pythonic’ command worked well with the other fMRI dataset of mine, I don’t know what’s wrong with my code.
The afni_proc.py command I used is:
afni_proc.py
-subj_id sub02
-script proc.sub02.r2
-out_dir sub02.r2.results
-dsets S02_run2+orig.HEAD
-copy_anat S02_t1_deob+orig
-anat_has_skull yes
-blocks despike tshift align volreg mask scale regress
-tcat_remove_first_trs 0
-tshift_interp -Fourier
-volreg_align_to MIN_OUTLIER
-align_opts_aea
-giant_move -cmass cmass
-volreg_align_e2a
-regress_stim_times 01.txt 02.txt 03.txt 04.txt 05.txt 06.txt 07.txt 08.txt 09.txt 10.txt 11.txt 12.txt 13.txt 14.txt 15.txt 16.txt 17.txt 18.txt 19.txt 20.txt 21.txt 22.txt 23.txt 24.txt 25.txt filler.txt
-regress_local_times
-regress_stim_labels 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 filler
-regress_basis ‘BLOCK(2,1)’
-regress_censor_motion 0.3
-regress_censor_outliers 0.1
-regress_opts_3dD
-jobs 4
-regress_run_clustsim no
-regress_est_blur_errts
-regress_est_blur_epits
-html_review_style pythonic

Thanks a lot.
-Joy

2

Hi, Joy-

What AFNI version do you have (output of “afni -ver”)?

I think the proc script dumps the terminal output of commands run to make the APQC in a file called “out.review_html” in the *results directory. You can check that to see where errors are likely occurring-- and/or you could please send that to me to check. (I notice from your list of blocks that are present, none of the @chauffeur_afni/volumetric images are present, like in the vorig, ve2a and vstats blocks; you don’t have a “tlrc” block, so there wouldn’t be a va2t block present, anyways.)

-pt