Hello,
I am seeking help with running my preprocessing script. I am using the “modern” version of resting state preprocessing that utilizes freesurfer masks. I’ve C/P the script below. I can not attach the output file here, but can send it upon request if needed.
I am finding that my preprocessing is stopping during the volume registration phase, and is failing to find a file. (see below). Has anyone run into a similiar problem, or would they be able to point me in a direction to figure this one out?
Thanks,
++ 3dAllineate: AFNI version=AFNI_18.3.00 (Oct 9 2018) [64-bit]
++ Authored by: Zhark the Registrator
** FATAL ERROR: can’t open --input dataset ‘anat_final.wave.nii+tlrc’ 
** Program compile date = Oct 9 2018
afni_proc.py -subj_id wave.nii
-blocks despike tshift align tlrc volreg blur mask regress
-copy_anat ASPD_H_02_SurfVol+orig.BRIK
-anat_follower_ROI aaseg anat aparc.a2009s+aseg.nii
-anat_follower_ROI aeseg epi aparc.a2009s+aseg.nii
-anat_follower_ROI FSvent epi ASPD_H_02_vent.nii
-anat_follower_ROI FSWe epi ASPD_H_02_WM.nii
-anat_follower_erode FSvent FSWe
-dsets wave.nii
-tcat_remove_first_trs 5
-align_opts_aea -cost lpc+ZZ
-tlrc_base MNI152_T1_2009c+tlrc
-tlrc_NL_warp
-volreg_align_to MIN_OUTLIER
-volreg_align_e2a
-volreg_tlrc_warp
-regress_motion_per_run
-regress_ROI_PC FSvent 3
-regress_make_corr_vols aeseg FSvent
-regress_anaticor_fast
-regress_anaticor_label FSWe
-regress_censor_motion 0.2
-regress_censor_outliers 0.1
-regress_apply_mot_types demean deriv
-regress_est_blur_epits
-regress_est_blur_errts