Hi AFNI experts,
I am trying to apply distortion correction using epi_b0_correct.py but AFNI keeps telling me “command not found.” My AFNI version is 18.2.15, but I have already updated the existing binaries using @update.afni.binaries -d. Running afni_system_check.py -check_all gives me the old binaries (I’m assuming, since it still says 2018).
afni version : Precompiled binary macosx_10.7_local: Aug 28 2018
AFNI_version.txt : AFNI_18.2.15, macosx_10.7_local, Aug 28 2018
which python : /usr/bin/python
python version : 2.7.16
which R : /usr/local/bin/R
R version : R version 4.0.5 (2021-03-31) – “Shake and Throw”
which tcsh : /bin/tcsh
Anyways, I think the problem is the afni version since all the older programs work fine (eg., 3dDeconvolve)…or maybe python? Any suggestions and thoughts would be very helpful and greatly appreciated. Thank you!