Docker container with 3dICC and 3dLMER?

AFNI Message Board
1

Hi AFNI base.

I’d like to use 3dICC and 3dLMEr on our high performance computing cluster without having to create a new AFNI module, and I figured using the AFNI singularity container would be a good way to do this.

I’ve run the following:

singularity pull docker://afni/afni_cmake_build
singularity run -B /data/$USER/workdir:/home/afni_user/work --cleanenv afni_cmake_build_latest.sif

And have been able to enter the container just fine. However, 3dICC and 3dLMEr don’t appear to be available in the container.

Did I pull the wrong docker container? Is the docker a few distros behind?

2

Hi-

Are you following the instructions from here:
https://github.com/ReproNim/neurodocker
… via the second link here:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/container.html
(even though at the moment the name there looks slightly different)?

What is the output of “afni -ver” in your container?

–pt

3

So this is the singularity I pulled, I did not use the Neurodocker:

singularity pull docker://afni/afni_cmake_build

singularity run afni_cmake_build_latest.sif

Precompiled binary 1: Mar 4 2021 (Version AFNI_99.99.99 ‘Alexios V Doukas the Bushy-eyebrowed’)