I have T1 images from different scanners that I’m trying to convert to nifti format. I tried to3d with the -anat option but the results were clearly wrong. I am now trying Dimon but am getting an error. I’m in the directory that has the .dcm data and here is the command line:
Dimon -infile_pattern ‘*.dcm’ -gert_create_dataset -gert_write_as_nifti
The error I get is: no_wait: no volume found in 170 files
I’ve been running afni 16.0.01 so I tried that first but also tried 17.0.00 and got the same error. I know the .dcm files are correct since I tried to use University of Oregon’s MRI Convert tool and that worked fine. I believe this is a GE scan.
Thanks for your help