Hi,
I am having an error in my single-subject preprocessing script that I created with afniproc. The first error that appears is “** FATAL ERROR: can’t open -base dataset ‘mprage_strip+tlrc’ :-(”
Any help would be appreciated! I am new to AFNI.
I pasted the full output below.
Also if it is helpful, here is the results that successfully output:
[dburr@hera DAY2TASK] > cd A000441.ulresults/
[dburr@hera A000441.ulresults] > ls
anat_final.A000441+tlrc.BRIK out.mask_overlap.txt
anat_final.A000441+tlrc.HEAD pb00.A000441.r01.tcat+orig.BRIK
censor_A000441_combined_2.1D pb00.A000441.r01.tcat+orig.HEAD
dfile.r01.1D pb00.A000441.r02.tcat+orig.BRIK
dfile.r02.1D pb00.A000441.r02.tcat+orig.HEAD
dfile.rall.1D pb01.A000441.r01.tshift+orig.BRIK
mat.r01.vr.aff12.1D pb01.A000441.r01.tshift+orig.HEAD
mat.r01.warp.aff12.1D pb01.A000441.r02.tshift+orig.BRIK
mat.r02.vr.aff12.1D pb01.A000441.r02.tshift+orig.HEAD
mat.r02.warp.aff12.1D rm.epi.all1+orig.BRIK.gz
motion_A000441_censor.1D rm.epi.all1+orig.HEAD
motion_A000441_CENSORTR.txt rm.epi.nomask.r01+tlrc.BRIK
motion_A000441_enorm.1D rm.epi.nomask.r01+tlrc.HEAD
motion_demean.1D rm.epi.nomask.r02+tlrc.BRIK
motion_deriv.1D rm.epi.nomask.r02+tlrc.HEAD
mprage_al_junk_e2a_only_mat.aff12.1D rm.epi.volreg.r01+orig.BRIK
mprage_al_junk_mat.aff12.1D rm.epi.volreg.r01+orig.HEAD
mprage_al_junk+orig.BRIK.gz rm.epi.volreg.r02+orig.BRIK
mprage_al_junk+orig.HEAD rm.epi.volreg.r02+orig.HEAD
mpragemprage_strip+orig.BRIK.gz rm.out.cen.r01.1D
mpragemprage_strip+orig.HEAD rm.out.cen.r02.1D
mpragemprage_strip+tlrc.BRIK stimuli
mpragemprage_strip+tlrc.HEAD TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
mpragemprage_strip_WarpDrive.log TT_N27_CA_EZ_MPM+tlrc.HEAD
mpragemprage_strip.Xaff12.1D TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
mpragemprage_strip.Xat.1D TT_N27_CA_EZ_PMaps+tlrc.HEAD
mprage+orig.BRIK TT_N27_EZ_LR+tlrc.BRIK.gz
mprage+orig.HEAD TT_N27_EZ_LR+tlrc.HEAD
outcount_A000441_censor.1D TT_N27_EZ_ML+tlrc.BRIK.gz
outcount_r01.1D TT_N27_EZ_ML+tlrc.HEAD
outcount_r02.1D TT_N27+tlrc.BRIK.gz
outcount.rall.1D TT_N27+tlrc.HEAD
[dburr@hera DAY2TASK] > tcsh ulproc_script A000441
auto-generated by afni_proc.py, Thu Jun 7 11:21:42 2012
(version 3.04, November 9, 2011)
– is current: afni_history as new as: 31 Oct 2011
most recent entry is: 31 Dec 2015
++ 3dcopy: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ 3dTcat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ 3dTcat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ 3dToutcount: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb00.A000441.r01.tcat+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb00.A000441.r01.tcat+orig.BRIK is 11.341526 degrees from plumb.
++ 86844 voxels passed mask/clip
++ 3dToutcount: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb00.A000441.r02.tcat+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb00.A000441.r02.tcat+orig.BRIK is 11.341526 degrees from plumb.
++ 88218 voxels passed mask/clip
++ 3dTshift: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb00.A000441.r01.tcat+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb00.A000441.r01.tcat+orig.BRIK is 11.341526 degrees from plumb.
++ 3dTshift: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb00.A000441.r02.tcat+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb00.A000441.r02.tcat+orig.BRIK is 11.341526 degrees from plumb.
#++ align_epi_anat version: 1.50
#++ turning off volume registration
#Script is running (command trimmed):
3dAttribute DELTA ./pb01.A000441.r01.tshift+orig
#Script is running (command trimmed):
3dAttribute DELTA ./pb01.A000441.r01.tshift+orig
#Script is running (command trimmed):
3dAttribute DELTA ./mprage+orig
#++ Multi-cost is lpc
#++ Removing all the temporary files
#Script is running:
\rm -f ./__tt_pb01.A000441.r01.tshift
#Script is running:
\rm -f ./__tt_mprage
#Script is running (command trimmed):
3dcopy ./mprage+orig ./__tt_mprage+orig
++ 3dcopy: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
#++ Removing skull from anat data
#Script is running (command trimmed):
3dSkullStrip -orig_vol -input ./__tt_mprage+orig -prefix ./__tt_mprage_ns
+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./__tt_mprage+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./__tt_mprage+orig.BRIK is 7.244892 degrees from plumb.
Warning 3dSkullStrip:*************
Surface self intersecting! trying again:
smoothing of 84, avoid_vent -1
Warning 3dSkullStrip:****************
Surface self intersecting! trying again:
smoothing of 96, avoid_vent -1
Warning 3dSkullStrip:****************
Surface self intersecting! trying again:
smoothing of 108, avoid_vent -1
Warning 3dSkullStrip:****************
Surface self intersecting! trying again:
smoothing of 120, avoid_vent -1
Warning 3dSkullStrip: Stubborn intersection remaining at smoothing of 120. Ignoring it.#Script is running (command trimmed):
3dinfo ./__tt_mprage_ns+orig | \grep ‘Data Axes Tilt:’|\grep ‘Oblique’
#++ Dataset /flash/whalen/DBURR/WHICHFEARREP/SUBJECTS/DAY2TASK/A000441.ulresults/__tt_mprage_ns+orig is oblique*
#Script is running (command trimmed):
3dAttribute DELTA ./__tt_mprage_ns+orig
#++ Spacing for anat to oblique epi alignment is 0.900000
#++ Matching obliquity of anat to epi
#Script is running (command trimmed):
3dWarp -verb -card2oblique ./pb01.A000441.r01.tshift+orig -prefix ./__tt_mprage_ns_ob -newgrid 0.900000 ./__tt_mprage_ns+orig | \grep -A 4 ‘# mat44 Obliquity Transformation ::’ > ./__tt_mprage_ns_obla2e_mat.1D
++ 3dWarp: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Deobliquing original dataset before obliquing
++ Combining oblique transformations
#++ Creating representative epi sub-brick
#Script is running (command trimmed):
3dbucket -prefix ./__tt_pb01.A000441.r01.tshift_ts ./pb01.A000441.r01.tshift+orig’[0]’
++ 3dbucket: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
#++ resampling epi to match anat data
#Script is running (command trimmed):
3dresample -master ./__tt_mprage_ns_ob+orig -prefix ./__tt_pb01.A000441.r01.tshift_ts_rs -inset ./__tt_pb01.A000441.r01.tshift_ts+orig’’ -rmode Cu
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./__tt_pb01.A000441.r01.tshift_ts+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./__tt_pb01.A000441.r01.tshift_ts+orig.BRIK is 11.341526 degrees from plumb.
#++ removing skull or area outside brain
#Script is running (command trimmed):
3dSkullStrip -orig_vol -input ./__tt_pb01.A000441.r01.tshift_ts_rs+orig -prefix ./__tt_pb01.A000441.r01.tshift_ts_rs_ns
#++ Computing weight mask
#Script is running (command trimmed):
3dBrickStat -automask -percentile 90.000000 1 90.000000 ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig
#++ Applying threshold of 537.000000 on /flash/whalen/DBURR/WHICHFEARREP/SUBJECTS/DAY2TASK/A000441.ulresults/__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig
#Script is running (command trimmed):
3dcalc -datum float -prefix ./__tt_pb01.A000441.r01.tshift_ts_rs_ns_wt -a ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig -expr ‘min(1,(a/537.000000))’
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
#++ Aligning anat data to epi data
#Script is running (command trimmed):
3dAllineate -lpc -wtprefix ./__tt_mprage_ns_ob_al_junk_wtal -weight ./__tt_pb01.A000441.r01.tshift_ts_rs_ns_wt+orig -source ./__tt_mprage_ns_ob+orig -prefix ./__tt_mprage_ns_ob_temp_al_junk -base ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig -nocmass -1Dmatrix_save ./mprage_al_junk_e2a_only_mat.aff12.1D -master SOURCE -weight_frac 1.0 -maxrot 6 -maxshf 10 -VERB -warp aff -source_automask+4 -onepass
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
++ Source dataset: ./__tt_mprage_ns_ob+orig.HEAD
++ Base dataset: ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig.HEAD
++ Loading datasets
++ 2364690 voxels in -source_automask+4
++ Zero-pad: not needed
++ 1862652 voxels [8.0%] in weight mask
++ Number of points for matching = 1862652
++ Local correlation: blok type = ‘RHDD(6.54321)’
++ shift param auto-range: -66.4…66.4 -91.3…91.3 -91.3…91.3
- Range param#4 [z-angle] = -6.000000 … 6.000000
- Range param#5 [x-angle] = -6.000000 … 6.000000
- Range param#6 [y-angle] = -6.000000 … 6.000000
- Range param#1 [x-shift] = -10.000000 … 10.000000
- Range param#2 [y-shift] = -10.000000 … 10.000000
- Range param#3 [z-shift] = -10.000000 … 10.000000
- 12 free parameters
++ Normalized convergence radius = 0.001000
++ OpenMP thread count = 8
++ ======= Allineation of 1 sub-bricks using Local Pearson Correlation Signed =======
++ ========== sub-brick #0 ========== [total CPU to here=0.0 s]
++ *** Fine pass begins *** -
- Enter alignment setup routine
-
- copying base image
-
- copying source image
-
- copying weight image
-
- using 1862652 points from base image [use_all=0]
-
- Exit alignment setup routine
- 1762343 total points stored in 2416 ‘RHDD(6.54321)’ bloks
-
- Initial cost = -0.006180
-
- Initial fine Parameters = 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.0000 1.0000 1.0000 0.0000 0.0000 0.0000
-
- Finalish cost = -0.016128 ; 777 funcs
-
- Final cost = -0.016128 ; 120 funcs
- Final fine fit Parameters:
x-shift= 3.7557 y-shift=-0.8691 z-shift= 0.1621
z-angle= 0.2372 x-angle=-2.7916 y-angle= 0.1444
x-scale= 1.0006 y-scale= 1.0102 z-scale= 1.0243
y/x-shear= 0.0311 z/x-shear=-0.0011 z/y-shear=-0.0548 -
- Fine net CPU time = 0.0 s
++ Computing output image
++ image warp: parameters = 3.7557 -0.8691 0.1621 0.2372 -2.7916 0.1444 1.0006 1.0102 1.0243 0.0311 -0.0011 -0.0548
++ Wrote -1Dmatrix_save ./mprage_al_junk_e2a_only_mat.aff12.1D
++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 137.2
++ ###########################################################
++ ### Please check results visually for alignment quality ###
++ ###########################################################
#Script is running (command trimmed):
cat_matvec -ONELINE ./mprage_al_junk_e2a_only_mat.aff12.1D ./__tt_mprage_ns_obla2e_mat.1D -I > ./mprage_al_junk_mat.aff12.1D
#++ Combining anat to epi and oblique transformations
#Script is running (command trimmed):
3dAllineate -base ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig -1Dmatrix_apply ./mprage_al_junk_mat.aff12.1D -prefix ./mprage_al_junk -input ./__tt_mprage_ns+orig -master SOURCE -weight_frac 1.0 -maxrot 6 -maxshf 10 -VERB -warp aff -source_automask+4 -onepass
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./__tt_mprage_ns+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./__tt_mprage_ns+orig.BRIK is 7.244892 degrees from plumb.
++ Source dataset: ./__tt_mprage_ns+orig.HEAD
++ Base dataset: ./__tt_pb01.A000441.r01.tshift_ts_rs_ns+orig.HEAD
++ Loading datasets
++ NOTE: base and source coordinate systems have different handedness
- Fine net CPU time = 0.0 s
-
Orientations: base=Right handed (RAI); source=Left handed (ASR) - Range param#4 [z-angle] = -6.000000 … 6.000000
- Range param#5 [x-angle] = -6.000000 … 6.000000
- Range param#6 [y-angle] = -6.000000 … 6.000000
- Range param#1 [x-shift] = -10.000000 … 10.000000
- Range param#2 [y-shift] = -10.000000 … 10.000000
- Range param#3 [z-shift] = -10.000000 … 10.000000
++ OpenMP thread count = 8
++ ========== Applying transformation to 1 sub-bricks ==========
++ ========== sub-brick #0 ========== [total CPU to here=0.0 s] -
- Enter alignment setup routine
-
- copying base image
-
- copying source image
-
- no weight image
-
- using 11 points from base image [use_all=0]
-
- Exit alignment setup routine
++ using -1Dmatrix_apply
++ Computing output image
++ image warp: parameters = 0.9951 -0.1047 0.0886 27.2286 0.1512 1.0189 0.0801 -22.7011 -0.0768 -0.0767 0.9931 -13.8014
++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 23.7
++ ###########################################################
#++ Creating final output: skullstripped original anat data
#Script is running (command trimmed):
3dcopy ./__tt_mprage_ns+orig mpragemprage_strip
++ 3dcopy: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
#++ Creating final output: anat data aligned to epi
- Exit alignment setup routine
copy is not necessary
#++ Saving history
#Script is running (command trimmed):
3dNotes -h “align_epi_anat.py -anat2epi -anat mprage+orig
-save_orig_skullstrip mprage_strip -suffix _al_junk -epi
pb01.A000441.r01.tshift+orig -epi_base 0 -volreg off -tshift off”
./mprage_al_junk+orig
#++ Removing all the temporary files
#Script is running:
\rm -f ./__tt_pb01.A000441.r01.tshift*
#Script is running:
\rm -f ./__tt_mprage*
Finished alignment successfully
Suffix not used.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./mpragemprage_strip+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./mpragemprage_strip+orig.BRIK is 7.244892 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./mpragemprage_strip+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./mpragemprage_strip+orig.BRIK is 7.244892 degrees from plumb.
*********** Warning *************
Dataset centers are 67.768409 mm
apart. If registration fails, or if
parts of the original anatomy gets
cropped, try adding option
-init_xform AUTO_CENTER
to your @auto_tlrc command.
Padding …
++ 3dZeropad: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ output dataset: ./__ats_tmp__ref_TT_N27_40pad+tlrc.BRIK
Resampling …
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./mpragemprage_strip+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./mpragemprage_strip+orig.BRIK is 7.244892 degrees from plumb.
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./__ats_tmp__resamp_step+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./__ats_tmp__resamp_step+orig.BRIK is 7.244892 degrees from plumb.
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./mpragemprage_strip+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./mpragemprage_strip+orig.BRIK is 7.244892 degrees from plumb.
Clipping -0.000100 917.000100 …
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___rs_mpragemprage_strip+tlrc.HEAD
- Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp__resamp_NN+tlrc.HEAD - Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp__resamp_edge_art+tlrc.HEAD - Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
Registration (linear final interpolation) …
++ 3dWarpDrive: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
RMS[0] = 100.99 47.2109 ITER = 12/137
100.99
Warping has converged.
++ 3dcopy: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ 3dWarp: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./mpragemprage_strip+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./mpragemprage_strip+orig.BRIK is 7.244892 degrees from plumb.
++ 7.244892 degrees from plumb.
*+ WARNING: Deoblique datasets with 3dWarp before proceeding with other transformations
Applying brain mask
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
++ 3dWarp: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ 3drename: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ THD_rename_dataset_files: rename __ats_tmp___pad40_mpragemprage_strip+orig.HEAD → __ats_tmp___pad40_mpragemprage_strip.skl+orig.HEAD
++ THD_rename_dataset_files: rename __ats_tmp___pad40_mpragemprage_strip+orig.BRIK.gz → __ats_tmp___pad40_mpragemprage_strip.skl+orig.BRIK.gz
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
Unpadding …
++ 3dZeropad: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ output dataset: ./__ats_tmp___upad40_mpragemprage_strip+orig.BRIK
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___upad40_mpragemprage_strip+orig
*+ WARNING: Changing the space of an ORIG view dataset may cause confusion!
*+ WARNING: NIFTI copies will be interpreted as TLRC view (not TLRC space).
*+ WARNING: Consider changing the view of the dataset to TLRC view also
++ 3drefit processed 1 datasets
Changing view of transformed anatomy
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___upad40_mpragemprage_strip+orig.HEAD
- Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
Setting parent with 3drefit -wset mpragemprage_strip+orig __ats_tmp___upad40_mpragemprage_strip+tlrc
++ 3drefit: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___upad40_mpragemprage_strip+tlrc
++ 3drefit processed 1 datasets
++ 3drename: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Warning: ignoring +tlrc on new_prefix.
++ THD_rename_dataset_files: rename __ats_tmp___upad40_mpragemprage_strip+tlrc.HEAD → mpragemprage_strip+tlrc.HEAD
++ THD_rename_dataset_files: rename __ats_tmp___upad40_mpragemprage_strip+tlrc.BRIK → mpragemprage_strip+tlrc.BRIK
Cleanup …
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
*+ WARNING: input ‘a’ is not used in the expression
++ 3dvolreg: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb01.A000441.r01.tshift+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb01.A000441.r01.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ Reading in base dataset ./pb01.A000441.r01.tshift+orig.BRIK
++ Oblique dataset:./pb01.A000441.r01.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ Reading input dataset ./pb01.A000441.r01.tshift+orig.BRIK
++ Edging: x=5 y=5 z=3
++ Creating mask for -maxdisp - Automask has 92661 voxels
- 9959 voxels left in -maxdisp mask after erosion
++ Initializing alignment base
++ Starting final pass on 79 sub-bricks: 0…1…2…3…4…5…6…7…8…9…10…11…12…13…14…15…16…17…18…19…20…21…22…23…24…25…26…27…28…29…30…31…32…33…34…35…36…37…38…39…40…41…42…43…44…45…46…47…48…49…50…51…52…53…54…55…56…57…58…59…60…61…62…63…64…65…66…67…68…69…70…71…72…73…74…75…76…77…78…
++ CPU time for realignment=0 s [=0 s/sub-brick]
++ Min : roll=-0.882 pitch=-4.052 yaw=-0.522 dS=-0.755 dL=-0.285 dP=-0.200
++ Mean: roll=-0.156 pitch=-0.383 yaw=-0.162 dS=+1.034 dL=-0.082 dP=-0.006
++ Max : roll=+0.802 pitch=+0.548 yaw=+0.124 dS=+3.633 dL=+0.191 dP=+1.578
++ Max displacements (mm) for each sub-brick:
0.00(0.00) 0.45(0.45) 0.32(0.23) 0.28(0.13) 1.20(1.18) 1.01(0.40) 0.50(0.76) 0.61(0.74) 0.31(0.52) 0.29(0.13) 0.67(0.67) 1.34(1.31) 1.32(0.33) 1.08(0.31) 0.94(0.34) 1.20(0.29) 1.24(0.18) 1.37(0.15) 1.38(0.15) 1.37(0.12) 1.17(0.24) 1.19(0.22) 1.24(1.18) 1.31(0.40) 1.09(0.25) 1.02(0.17) 1.37(0.50) 1.35(0.45) 0.87(0.67) 8.92(8.20) 7.29(2.56) 4.02(3.31) 1.67(2.89) 1.79(0.21) 1.95(0.24) 1.75(0.22) 1.87(0.16) 1.65(0.43) 1.84(0.28) 1.88(0.18) 2.56(0.77) 2.75(0.35) 2.74(0.12) 3.13(0.47) 2.94(0.33) 2.49(0.64) 2.50(0.49) 2.19(0.36) 2.24(0.42) 2.63(0.40) 2.54(0.19) 2.44(0.20) 2.53(0.15) 2.52(0.10) 2.55(0.19) 2.55(0.11) 2.29(0.27) 2.40(0.13) 2.51(0.12) 2.32(0.31) 2.15(0.18) 2.28(0.19) 2.27(0.12) 2.36(0.16) 2.11(0.31) 2.40(0.36) 2.57(0.20) 2.50(0.11) 2.48(0.08) 2.41(0.10) 2.54(0.15) 2.52(0.10) 2.65(0.20) 2.58(0.10) 2.68(0.14) 2.76(0.10) 3.18(0.44) 3.01(0.36) 2.94(0.25)
++ Max displacement in automask = 8.92 (mm) at sub-brick 29
++ Max delta displ in automask = 8.20 (mm) at sub-brick 29
++ Wrote dataset to disk in ./rm.epi.volreg.r01+orig.BRIK
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb01.A000441.r01.tshift+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb01.A000441.r01.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ Source dataset: ./pb01.A000441.r01.tshift+orig.HEAD
++ Base dataset: ./mpragemprage_strip+tlrc.HEAD
++ Loading datasets
++ master dataset for output = base
++ changing output grid spacing to 3.0000 mm
++ OpenMP thread count = 8
++ ========== Applying transformation to 79 sub-bricks ==========
++ ========== sub-brick #0 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #1 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #2 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #3 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #4 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #5 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #6 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #7 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #8 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #9 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #10 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #11 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #12 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #13 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #14 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #15 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #16 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #17 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #18 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #19 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #20 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #21 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #22 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #23 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #24 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #25 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #26 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #27 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #28 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #29 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #30 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #31 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #32 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #33 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #34 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #35 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #36 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #37 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #38 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #39 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #40 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #41 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #42 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #43 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #44 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #45 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #46 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #47 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #48 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #49 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #50 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #51 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #52 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #53 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #54 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #55 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #56 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #57 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #58 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #59 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #60 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #61 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #62 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #63 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #64 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #65 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #66 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #67 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #68 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #69 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #70 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #71 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #72 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #73 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #74 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #75 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #76 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #77 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #78 ========== [total CPU to here=0.0 s]
++ Output dataset ./rm.epi.nomask.r01+tlrc.BRIK
++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 13.7
++ ###########################################################
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
** FATAL ERROR: can’t open -base dataset ‘mprage_strip+tlrc’
** Program compile date = Jan 1 2016
++ 3dTstat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can’t open dataset rm.epi.1.r01+tlrc
** Program compile date = Jan 1 2016
++ 3dvolreg: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: RW Cox
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb01.A000441.r01.tshift+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb01.A000441.r01.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ Reading in base dataset ./pb01.A000441.r01.tshift+orig.BRIK
++ Oblique dataset:./pb01.A000441.r02.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ centers of base and input datasets are 12.31 mm apart
++ Reading input dataset ./pb01.A000441.r02.tshift+orig.BRIK
++ Edging: x=5 y=5 z=3
++ Creating mask for -maxdisp - Automask has 94063 voxels
- 10089 voxels left in -maxdisp mask after erosion
++ Initializing alignment base
++ Starting final pass on 79 sub-bricks: 0…1…2…3…4…5…6…7…8…9…10…11…12…13…14…15…16…17…18…19…20…21…22…23…24…25…26…27…28…29…30…31…32…33…34…35…36…37…38…39…40…41…42…43…44…45…46…47…48…49…50…51…52…53…54…55…56…57…58…59…60…61…62…63…64…65…66…67…68…69…70…71…72…73…74…75…76…77…78…
++ CPU time for realignment=0 s [=0 s/sub-brick]
++ Min : roll=-0.873 pitch=-0.147 yaw=-1.039 dS=-10.602 dL=-0.335 dP=+6.611
++ Mean: roll=-0.545 pitch=+0.188 yaw=-0.057 dS=-7.487 dL=-0.004 dP=+6.949
++ Max : roll=-0.289 pitch=+1.347 yaw=+0.281 dS=-6.835 dL=+0.131 dP=+7.310
++ Max displacements (mm) for each sub-brick:
11.68(0.00) 11.45(0.65) 11.40(0.19) 11.51(0.30) 11.49(0.29) 11.58(0.25) 11.66(0.29) 14.97(4.22) 15.65(0.82) 14.52(1.19) 13.88(0.72) 13.51(0.40) 13.05(0.57) 12.31(0.79) 13.01(0.82) 13.77(0.93) 11.45(2.39) 10.57(1.39) 11.07(0.73) 10.57(0.63) 10.96(0.48) 11.81(1.03) 10.89(1.08) 11.10(0.49) 10.73(0.41) 10.87(0.17) 10.72(0.21) 10.50(0.27) 10.49(0.22) 10.58(0.10) 10.34(0.26) 10.52(0.20) 10.41(0.12) 10.40(0.15) 10.34(0.13) 10.39(0.11) 10.29(0.13) 10.31(0.05) 10.32(0.07) 10.30(0.07) 10.28(0.06) 10.25(0.05) 10.27(0.10) 10.27(0.26) 10.20(0.38) 10.29(0.16) 10.17(0.16) 10.23(0.11) 10.25(0.08) 10.21(0.10) 10.16(0.09) 10.25(0.10) 10.26(0.06) 10.22(0.11) 10.20(0.14) 10.40(0.22) 10.39(0.26) 10.16(0.33) 10.26(0.11) 10.20(0.08) 10.19(0.08) 10.20(0.11) 10.18(0.10) 10.16(0.13) 10.15(0.13) 10.20(0.21) 10.13(0.08) 10.21(0.09) 10.16(0.10) 10.13(0.17) 10.06(0.18) 10.14(0.12) 10.13(0.15) 10.03(0.13) 10.10(0.10) 10.07(0.16) 10.09(0.10) 10.12(0.08) 10.23(0.16)
++ Max displacement in automask = 15.65 (mm) at sub-brick 8
++ Max delta displ in automask = 4.22 (mm) at sub-brick 7
++ Wrote dataset to disk in ./rm.epi.volreg.r02+orig.BRIK
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./pb01.A000441.r02.tshift+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./pb01.A000441.r02.tshift+orig.BRIK is 11.341526 degrees from plumb.
++ Source dataset: ./pb01.A000441.r02.tshift+orig.HEAD
++ Base dataset: ./mpragemprage_strip+tlrc.HEAD
++ Loading datasets
++ master dataset for output = base
++ changing output grid spacing to 3.0000 mm
++ OpenMP thread count = 8
++ ========== Applying transformation to 79 sub-bricks ==========
++ ========== sub-brick #0 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #1 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #2 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #3 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #4 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #5 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #6 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #7 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #8 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #9 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #10 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #11 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #12 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #13 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #14 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #15 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #16 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #17 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #18 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #19 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #20 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #21 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #22 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #23 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #24 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #25 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #26 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #27 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #28 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #29 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #30 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #31 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #32 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #33 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #34 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #35 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #36 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #37 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #38 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #39 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #40 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #41 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #42 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #43 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #44 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #45 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #46 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #47 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #48 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #49 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #50 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #51 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #52 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #53 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #54 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #55 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #56 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #57 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #58 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #59 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #60 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #61 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #62 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #63 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #64 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #65 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #66 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #67 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #68 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #69 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #70 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #71 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #72 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #73 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #74 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #75 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #76 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #77 ========== [total CPU to here=0.0 s]
++ ========== sub-brick #78 ========== [total CPU to here=0.0 s]
++ Output dataset ./rm.epi.nomask.r02+tlrc.BRIK
++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 13.5
++ ###########################################################
++ 3dAllineate: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Zhark the Registrator
** FATAL ERROR: can’t open -base dataset ‘mprage_strip+tlrc’
** Program compile date = Jan 1 2016
++ 3dTstat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can’t open dataset rm.epi.1.r02+tlrc
** Program compile date = Jan 1 2016
3dMean: No match.
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset rm.epi.mean+tlrc
** Program compile date = Jan 1 2016
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset mask_epi_extents+tlrc
** Program compile date = Jan 1 2016
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset mask_epi_extents+tlrc
** Program compile date = Jan 1 2016
++ 3dcopy: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
Program 3dmerge
++ 3dmerge: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
*** cannot open dataset pb02.A000441.r01.volreg+tlrc
Program 3dmerge
++ 3dmerge: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
*** cannot open dataset pb02.A000441.r02.volreg+tlrc
++ 3dAutomask: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Emperor Zhark
** FATAL ERROR: Can’t open dataset ‘pb03.A000441.r01.blur+tlrc’
** Program compile date = Jan 1 2016
++ 3dAutomask: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: Emperor Zhark
** FATAL ERROR: Can’t open dataset ‘pb03.A000441.r02.blur+tlrc’
** Program compile date = Jan 1 2016
3dMean: No match.
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset rm.mean+tlrc
** Program compile date = Jan 1 2016
invalid master dataset <full_mask.A000441+tlrc>
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset rm.resam.anat+tlrc
** Program compile date = Jan 1 2016
++ 3dOverlap: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
** FATAL ERROR: Can’t open dataset ‘full_mask.A000441+tlrc’
** Program compile date = Jan 1 2016
++ 3dTstat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can’t open dataset pb03.A000441.r01.blur+tlrc
** Program compile date = Jan 1 2016
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset pb03.A000441.r01.blur+tlrc
** Program compile date = Jan 1 2016
++ 3dTstat: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can’t open dataset pb03.A000441.r02.blur+tlrc
** Program compile date = Jan 1 2016
++ 3dcalc: AFNI version=AFNI_16.0.00 (Jan 1 2016) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can’t open dataset pb03.A000441.r02.blur+tlrc
** Program compile date = Jan 1 2016
total number of censored TRs = 9
3dDeconvolve: No match.
** 3dDeconvolve error, failing…
(consider the file 3dDeconvolve.err)
[dburr@hera DAY2TASK] >