I am hoping someone can shed some light on an issue that I am having. I am running afni version 21.2.01. The afni program loads but right after it gets loaded the RDP session that I am viewing the computer through crashes. I am able to reconnect to the computer and relaunch afni but the same issue happens. I am running afni on RHEL 7.8. Please let me know what log files you need to troubleshoot this issue.
Thanks for the help!
So, to clarify, is the following correct (please correct anything that isn’t):
- you have AFNI installed remotely on a RHEL 7.8 system.
- You login to it (with: “ssh -XY …”?)
- and then type “afni” in a directory that has data
- and the whole session crashes?
What is the output of running:
on that remote system?
And what is the output of
Also, what happens if you just type the following in the RHEL session:
? Does that crash, or does it show the SUMA GUI up and running with some random shape in it?
Sorry for the delay on this, I built a new server on RHEL 8 and it seems to work a lot better now.
But I am having another issue related to the install.
testing ability to start various programs…
afni : success
suma : success
3dSkullStrip : FAILURE
3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
uber_subject.py : success
3dAllineate : success
3dRSFC : FAILURE
3dRSFC: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
SurfMesh : success
3dClustSim : success
3dMVM : success
For the life of me, I cannot get this fixed. libgsl.so.0: cannot open shared object file: No such file or directory.
OK, cool, glad that most things are getting there.
Re. GSL: on some Linux (e.g., Ubuntu 20.04), we have to make a soft link. Just to see what is there on your RHel system, what is the output of:
Comes back with this.
Just circling back on this. Any updates?