afni 17.2.16 crash at startup

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1

Hello,

I’m an HPC sysadmin and I’m trying to install AFNI for one of our users. It seems the compilation is working well, but AFNI crash when I launch it.

afni
Precompiled binary linux_openmp_64: Sep 21 2017 (Version AFNI_17.2.16)

Thanks go to J Gonzalez-Castillo for useful feedback

Initializing: X11[The X.Org Foundation v 11804000]… Widgets.++ load_atlas: atlas TTatlas+tlrc not found in any directory

Fatal Signal 11 (SIGSEGV) received
genx_load_atlas_dset
Atlas_With_Trimming
AFNI_make_wid1
AFNI_make_widgets
new_AFNI_controller
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_17.2.16 Compile date = Sep 21 2017
** [[Precompiled binary linux_openmp_64: Sep 21 2017]]
** Program Death **

I’m compiling it using easybuild (a build system for hpc) .

Here is the original file that is used to compile AFNI, maybe it’s interesting because you can see what lib and compiler are used:

https://github.com/easybuilders/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/a/AFNI/AFNI-20160329-intel-2016a-Python-2.7.11.eb

I’m using a slighty modified file to compile AFNI (only the afni src change).

Thanks for any clue

2

It looks like you’re missing the default atlases. If you have them in the same directory as afni, then you should be good to go. Otherwise, set AFNI_ATLAS_PATH (in the shell, command line or in .afnirc) to the directory where they are.