Hi all,
I have a quick question. If I aligned the brain along ac-pc during scanning, should I use 3dwarp -deoblique on the anatomical scan before I us afni_proc.py?
Thank you so much!
Z
It is not necessary if you have an align step in your script. Depending on the scanner parameters of each sequence, you may end up playing with options like “-giant_move”.
Thank you! I did have a align step in my afin_proc.py. But it keeps giving me WARNING in the terminal…
Warnings are normal and expected. They are there to alert you that something may be going on. Notice that they’ll go away after the align step is performed!