I’d like to confirm that a warning message in my output.proc file is ok to ignore.
It is in the outcount autoblock at the very beginning of pre-processing. The warning states that the input dataset is not 3d+time, and it will therefore assume the TR = 1.0. Since the input file is the 1D outcount file, I am assuming this is just a stock warning for situations in which input files are not 3d+time?
I’d just like to confirm that the script will not go on to assume that the TR =1.0 for the functional runs, correct?
Error shown below, and thank you in advance for the clarification!!
set minindex = `3dTstat -argmin -prefix - outcount_rall.1D\' 3dTstat -argmin -prefix - outcount_rall.1D' ++ 3dTstat: AFNI version=AFNI_19.2.26 (Sep 24 2019) [64-bit] ++ Authored by: KR Hammett & RW Cox e[7m*+ WARNING:e[0m Input dataset is not 3D+time; assuming TR=1.0 set ovals = ( `1d_tool.py -set_run_lengths $tr_counts -index_to_run_tr $minindex` ) 1d_tool.py -set_run_lengths 108 108 -index_to_run_tr 127 set minoutrun = 02 set minouttr = 19 echo min outlier: run 02, TR 19 tee out.min_outlier.txt min outlier: run 02, TR 19 foreach run ( 01 02 )