3dANOVA3 help

Dear AFNI community:
I’m running my first 3dANOVA3 script (or at least trying to) and I received the following error messages:

Fatal Signal 11 (SIGSEGV) received
3dANOVA3 main
Bottom of Debug Stack
** Command line was:
3dANOVA3 -type 5
** AFNI version = AFNI_19.2.07 Compile date = Jul 30 2019
** [[Precompiled binary linux_openmp_64: Jul 30 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /home/amenyoawudepe/.afni.crashlog
[amenyoawudepe@ndsw-hmcs-agency scripts]> -alevels 2\

bash: -alevels: command not found
,and it continues as such all the way down

This is the script I am trying to run

3dANOVA3 -type 5
-alevels 2
-blevels 2
-clevels 15
-dset 1 1 1 HV01_3T_Y0+tlrc
-dset 1 2 1 HV01_3T_Y1+tlrc
-dset 1 1 2 HV02_3T_Y0+tlrc
-dset 1 2 2 HV02_3T_Y1+tlrc
-dset 1 1 3 HV03_3T_Y0+tlrc
-dset 1 2 3 HV03_3T_Y1+tlrc
-dset 1 1 4 HV06_3T_Y0+tlrc
-dset 1 2 4 HV06_3T_Y1+tlrc
-dset 1 1 5 HV07_3T_Y0+tlrc
-dset 1 2 5 HV07_3T_Y1+tlrc
-dset 2 1 6 PD02_3T_Y0+tlrc
-dset 2 2 6 PD02_3T_Y1+tlrc
-dset 2 1 7 PD03_3T_Y0+tlrc
-dset 2 2 7 PD03_3T_Y1+tlrc
-dset 2 1 8 PD04_3T_Y0+tlrc
-dset 2 2 8 PD04_3T_Y1+tlrc
-dset 2 1 9 PD07_3T_Y0+tlrc
-dset 2 2 9 PD07_3T_Y1+tlrc
-dset 2 1 10 PD08_3T_Y0+tlrc
-dset 2 2 10 PD08_3T_Y1+tlrc
-dset 2 1 11 PD09_3T_Y0+tlrc
-dset 2 2 11 PD09_3T_Y1+tlrc
-dset 2 1 12 PD10_3T_Y0+tlrc
-dset 2 2 12 PD10_3T_Y1+tlrc
-dset 2 1 13 PD15_3T_Y0+tlrc
-dset 2 2 13 PD15_3T_Y1+tlrc
-dset 2 1 14 PD19_3T_Y0+tlrc
-dset 2 2 14 PD19_3T_Y1+tlrc
-dset 2 1 15 PD21_3T_Y0+tlrc
-dset 2 2 15 PD21_3T_Y1+tlrc
-adiff 1 2 HVvsPD
-bdiff 1 2 Y0vsY1
-bucket HV_n_PD_anova

Is there anything I am doing wrong, or anything I am missing?

Depending on which shell is used and how the command is applied, you might want a space before each backslash character. Note here that you get the error:

bash: -alevels: command not found

So the 3dANOVA3 command is ending before the -alevels option is even applied.

Try running file_tool on the script:

file_tool -test -infiles SCRIPT -prefix FIXED.txt

Hopefully the output FIXED.txt will work.

  • rick